rs218048033 SNP Detail

Summary

• ID
  rs218048033
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61911721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAAGTA GAAGAAATTG
  ATTTTTTTTT TTTGATTGAT TCTCCTCTGA CTCATCCTGT TTTGCTTCTG TGACAGCAGT
  TTACAGAACT GGAAAGGTGT CTCTTTTCTG TTGTTTCTGG TAATTTGTAT TATTTGCTCC
  TTGAAAGTCT GTCTGCTGAG TTCTTACCAT CTCCACGGAT CCGATTCTTG TCTTCTTTGA
  M
  CGTGGAAGGC TGGCAGGCAG CCTGCCTGGT TGCTGAGGCC TCTGTCTTCC ATGTCCGGGA
  CCTTCTGTCT GCCTGCCCAA TCTAGCTGCT ATCCTTAGGC ACCTCAGCTG TTGACTCTCT
  TGGATCATAG GTTACCTTTG ATTCCATTTT GTGCAAGATG CCCTGAATTT GTTCATATTA
  AGGGCAGACC AGCATTTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394270356	MGP_WTSI_15_61871427	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218048033					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394270356	MGP_WTSI_15_61871427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61911721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7133	CpG island 7133	1587 bp distal
Gm54427	predicted gene, 54427	1671 bp downstream
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	within coordinates
Rr503088	regulatory region 503088	1742 bp distal
Rr503089	regulatory region 503089	475 bp distal
Rr503090	regulatory region 503090	214 bp distal
Tssr131427	transcription start site region 131427	1814 bp downstream
Tssr131428	transcription start site region 131428	610 bp downstream
Tssr131429	transcription start site region 131429	580 bp downstream
Tssr134486	transcription start site region 134486	718 bp upstream
Tssr134487	transcription start site region 134487	700 bp upstream