rs218082214 SNP Detail

Summary

• ID
  rs218082214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTAAGT TTGAAATAAA
  AAAGAAAAAA AATTTTTGAA CCCTACAGTT CCTAGTTTTT ATACGTTAGA ATCAGCTTCA
  TCTAGTCAAT GAATCTGTCT CAAAAGCATT TTCAAATCTG GTCTCCTAAA CTGAAGTCCC
  AGCCCAGGTG CCTTCTCCTC TGAGAGAAGT CCCCCTGGAG CCCCTGGCAA CAGATCACTG
  Y
  CTGTCACCCG CTGGCTCTCC TTCCTGGGAG CACACAGGTC TCAATCTTGT TTCTCATCCC
  CTTCTTTTGC GTCTGTTAAA CTGGGGCCAC GGACTCTGCC GCCTTCCTAA GTGTGTACTC
  ATGGTGCCTA AAACCCACAG AGGCACTTTA TAAACCTCGA CACACTGCAT CCGTTTAATG
  GCGTCGAAAG GGAAGGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787277	MGP_WTSI_11_69412884	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218082214					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787277	MGP_WTSI_11_69412884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490208 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	354 bp downstream
Gm72066	predicted gene, 72066	347 bp upstream
Rr386229	regulatory region 386229	25 bp upstream
Rr450033	regulatory region 450033	166 bp proximal
Rr450034	regulatory region 450034	207 bp proximal
Rr450035	regulatory region 450035	659 bp proximal
Tssr3544	transcription start site region 3544	1313 bp downstream
Tssr102487	transcription start site region 102487	631 bp upstream
Tssr102488	transcription start site region 102488	1781 bp upstream
Tssr102489	transcription start site region 102489	1856 bp upstream
Tssr108712	transcription start site region 108712	625 bp downstream
Tssr108713	transcription start site region 108713	770 bp downstream
Tssr108714	transcription start site region 108714	852 bp downstream
Tssr108715	transcription start site region 108715	865 bp downstream
Tssr108716	transcription start site region 108716	1177 bp downstream
Tssr108717	transcription start site region 108717	1202 bp downstream
Tssr108718	transcription start site region 108718	1261 bp downstream
Tssr108719	transcription start site region 108719	1272 bp downstream
Tssr108720	transcription start site region 108720	1276 bp downstream
Tssr108721	transcription start site region 108721	1290 bp downstream
Tssr108722	transcription start site region 108722	1371 bp downstream
Tssr108723	transcription start site region 108723	1399 bp downstream
Tssr108724	transcription start site region 108724	1452 bp downstream
Tssr108725	transcription start site region 108725	1476 bp downstream
Tssr108726	transcription start site region 108726	1571 bp downstream
Tssr108727	transcription start site region 108727	1593 bp downstream
Tssr108728	transcription start site region 108728	1637 bp downstream
Tssr108729	transcription start site region 108729	1724 bp downstream
Tssr108730	transcription start site region 108730	1756 bp downstream
Tssr108731	transcription start site region 108731	1787 bp downstream
Tssr108732	transcription start site region 108732	1848 bp downstream