rs218083884 SNP Detail

Summary

• ID
  rs218083884
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25152653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGCTGC TGCCTGTCGT
  AGTCCAATGA GAACGCTGAA GGGGAGGGTT TTAGTGGGTG TTCTCCAGTT AACTGGGCCG
  TAGGCTTCTG CTATAGATAG GCAGTTCTGC CCTTAGGTCA GAGCGCGCTT GCCCAATTGG
  AGGCTACCAA GGGGGGCGTG GCACGGCGCG GTACTGAGGC AGGTAGCTGA GAGTCTGTAC
  S
  GCGCGCGGTC GCCGTGCAGT CCTATCGGCG GCCGCGCGTC CGCAGCATGG CCGGCCTGGG
  GCGGCTCGAC CCGGGGCCGC GAACCGTGAT GCCCGCCTGG AAACGGGAGA TCCTTGAGCG
  GAGGCGAGCT AAACTGGCCG CCCTGAGCGG AGGCCAGGGA TCTGGAGCGG CGCCGGATGG
  GCCTAACGAG CGGCTGGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405718	MGP_WTSI_2_25118161	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218083884					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405718	MGP_WTSI_2_25118161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25152653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	within coordinates
Rr396819	regulatory region 396819	51 bp downstream
Rr553041	regulatory region 553041	13 bp distal
Tprn	taperin	within coordinates
Tssr16679	transcription start site region 16679	98 bp downstream
Tssr16680	transcription start site region 16680	78 bp downstream
Tssr16681	transcription start site region 16681	within coordinates
Tssr16682	transcription start site region 16682	558 bp upstream
Tssr16683	transcription start site region 16683	571 bp upstream
Tssr16684	transcription start site region 16684	651 bp upstream
Tssr16685	transcription start site region 16685	718 bp upstream
Tssr16686	transcription start site region 16686	731 bp upstream
Tssr16687	transcription start site region 16687	1278 bp upstream
Tssr16688	transcription start site region 16688	1629 bp upstream
Tssr16689	transcription start site region 16689	1663 bp upstream