rs218085170 SNP Detail

Summary

• ID
  rs218085170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56980145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTCTGC CGGCAAACTT
  GGAAGGGTCG TGGGCGCGCT CTGGGGAGGC GCGGGCACCG TGGGCCCGCG GTTGTTAAGG
  ACTCTGGGGG CGGGGGCAAT GGCTGTATTT GCCGGAGGAG ACTTGGGGCG GGAGAGGTTC
  CAGCCACTAG CCTGGGAGCT GCCGGTGTGT CCGAACACGG CATTTTAGCA AGTACTCGGC
  K
  GCAGAACCGG CTAGACTGCG GTCCGGCGTG GAGCGCTTGC TGAGTGTAGA AAAGCTCTAG
  GAACTCGGCG GATTCAATTC GCGGCCCCAG CTGATCCCCT CGCAAACATG GAGCTGCCTC
  CTTCCCCGCC CACCTCACGG CCGCGGCGGC TGCTCCCCCT CCCTGAGTAG TGTGTGTGCT
  GCCGGGGCTC CCTCTTCCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681844	MGP_WTSI_9_56920668	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218085170					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681844	MGP_WTSI_9_56920668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56980145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21807	CpG island 21807	within coordinates
Cpgi21808	CpG island 21808	1593 bp proximal
Gm10658	predicted gene 10658	895 bp upstream
Gm57026	predicted gene, 57026	881 bp upstream
Rr368762	regulatory region 368762	within coordinates
Rr401391	regulatory region 401391	760 bp downstream
Rr679580	regulatory region 679580	930 bp distal
Rr679581	regulatory region 679581	403 bp distal
Rr679582	regulatory region 679582	193 bp proximal
Rr679583	regulatory region 679583	391 bp proximal
Rr679584	regulatory region 679584	614 bp proximal
Rr679585	regulatory region 679585	694 bp proximal
Rr679586	regulatory region 679586	1987 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	within coordinates
Tssr85282	transcription start site region 85282	813 bp downstream
Tssr85283	transcription start site region 85283	785 bp downstream
Tssr85284	transcription start site region 85284	874 bp upstream
Tssr85285	transcription start site region 85285	997 bp upstream
Tssr89752	transcription start site region 89752	999 bp upstream
Tssr89753	transcription start site region 89753	956 bp upstream