rs218087516 SNP Detail

Summary

• ID
  rs218087516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34851080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACTCTC TCTTCTCACA
  CTGCAATACA AAGTTTAAAG AAGATTGTCA GCACAGCTGC TGAAACTCCA GGGAATCTAC
  TCAGCCCTGT CATAAGCCCA CACACTGTCA AATGCTCCGG GCCTGCCCTA ATTTCAGTCC
  CATCAGAAGC AGGCCAGTGG ACTTCTAGCC TTCCTTTCTA TGACAGCACT TTCCTTCACA
  Y
  CCTTCAGAGT TATTTTTTAC ACTGCGGTGG CTTTTTACAG GTCTCTTTCA CCGCCTTCTC
  ACCTCCATCT TCCTTAGTCT CATCTCCATG GCTCCCAGAA TGGACAATCT ATCTGCTGAA
  CAGAGGCGTC TCATCCTCCT TCTAGTCTTT GGGGACCCAC CTGGGCCACA CCCCACACTT
  TGGAACATCT CGGTGACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353605815	MGP_WTSI_2_34816588	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218087516					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353605815	MGP_WTSI_2_34816588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34851080 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			291 bp proximal
Gm46733	predicted gene, 46733			1611 bp upstream
Gm52552	predicted gene, 52552			within coordinates
Gm74854	predicted gene, 74854			1914 bp downstream
Rr396907	regulatory region 396907			1896 bp upstream
Rr555567	regulatory region 555567			1997 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			457 bp proximal
Rr555570	regulatory region 555570			507 bp proximal
Rr555571	regulatory region 555571			1278 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17440	transcription start site region 17440			40 bp downstream
Tssr17441	transcription start site region 17441			333 bp upstream
Tssr17442	transcription start site region 17442			615 bp upstream
Tssr17443	transcription start site region 17443			634 bp upstream
Tssr17444	transcription start site region 17444			651 bp upstream
Tssr17445	transcription start site region 17445			816 bp upstream
Tssr23673	transcription start site region 23673			487 bp downstream
Tssr23674	transcription start site region 23674			683 bp downstream
Tssr23675	transcription start site region 23675			721 bp downstream
Tssr23676	transcription start site region 23676			734 bp downstream
Tssr23677	transcription start site region 23677			752 bp downstream
Tssr23678	transcription start site region 23678			885 bp downstream
Tssr23679	transcription start site region 23679			1859 bp downstream
Tssr23680	transcription start site region 23680			1913 bp downstream