rs218097391 SNP Detail

Summary

• ID
  rs218097391
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:127475315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCCTCA AGCTCTGAAC
  AAAGAAGTCA TAGAAGCACA AACTGAGATG AATACTGCCT CCAAATCCAC AGGATGAAGA
  TTGAAAATTT CTCGACAACT TGACCTTAGA CTTCCCAGTC TCTACAACTG GGAGAAATGA
  ATATATATGT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATCATGTT
  G
  TGGCAACTCA AGGGAGTTAA ATGATCACAA AATTAAACGT AATGTCACTA AACATAAATA
  AAGTAGAAGA TCTATTAGGA ATATCAAAGG GGTCAGCCAA AACTCCATGC TGTTAAGTGT
  CTAAAGTTCA CAGACATTGA TACTTCAGAC TGAAATTTCC TCTCTTCAGT TCAGTCAAAG
  ACAAGACAGA ATATGCTGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss404559632	MGP_WTSI_X_125109102	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs218097391					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404559632	MGP_WTSI_X_125109102	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:127475315 () rs orientation: forward

Symbol	Name	Function Class
Rr2779	regulatory region 2779	1486 bp proximal
Rr9113	regulatory region 9113	1687 bp proximal
Rr395642	regulatory region 395642	1702 bp upstream