rs218101064 SNP Detail

Summary

• ID
  rs218101064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3727181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTTCCTC TCTTACTATT TTAATGTCTT
  TTTTTTTTTG TTGTTTTTGT TGAAGGAATA CAGTATTTTA TTGCCCCAAA ACATTCTTTC
  CAGGGCCTTC TGTGTACCCT GAAGAGCTGT ATGAATTTTT TTTTTAATTG GTAATTTCTC
  Y
  CAGCTTTTAA AAAGGCATTG CATGAGCTTT GGGCTGCTAG CTGCTTCAAG TTTCCTAGAA
  AATGTCTAGG TATATTTGGA CGGATAGTAT GTTTTAATAA GTATCTTGAG CCAACTCACA
  TGCAAAAGAA AAAAAAAGAA ACAAATCGTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205087	CHEV_2_3643416	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218101064					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3727181 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1508 bp upstream
Rr396754	regulatory region 396754	679 bp upstream
Rr550941	regulatory region 550941	1867 bp distal
Rr550942	regulatory region 550942	159 bp proximal
Tssr15911	transcription start site region 15911	1030 bp upstream
Tssr22380	transcription start site region 22380	576 bp downstream
Tssr22381	transcription start site region 22381	643 bp downstream