rs218106740 SNP Detail

Summary

• ID
  rs218106740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:120880116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAGTAAA CTGCAACCCC
  AGACACAGCT TGCACTCTCC TGGAGAAAGG TTCCCATCTC TGAATGACAC ATGACTACCA
  TAGCACAACT GGTTGTTATA ATCAATCTTC AGAAAGCACA AAACCTTTTG GCAAGATCTC
  AGGGAACAAA AAGTTTCAAA ATACCTATTT TCTGATGCCC ATGAAAGGGT GGCTAATGGA
  Y
  TGGTTTTCAG TCTAGCTCCT ATATCCTGAG GTTAAACTTC TGCCAAAATC TATTGTTCTA
  TAAATACGCC AAACAGCTCC AATTTACCCA GCACTTTGAC TCCCAAACAT TGCCGAGAAG
  GCATCTGGCT CTCTACTTGG TTATAAATAT TTAAATAAGC AAATCCTAAG TATCTCTAAA
  GCATATTTTA CTCATCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384952570	MGP_WTSI_11_120850604	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218106740					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952570	MGP_WTSI_11_120850604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120880116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	851 bp proximal
Csnk1d	casein kinase 1, delta	Intron
Gm57327	predicted gene, 57327	1885 bp upstream
Rr403207	regulatory region 403207	1909 bp upstream
Rr461861	regulatory region 461861	1475 bp distal
Rr461862	regulatory region 461862	398 bp distal
Rr461863	regulatory region 461863	79 bp distal
Rr461864	regulatory region 461864	200 bp proximal
Rr461865	regulatory region 461865	1617 bp proximal
Rr461866	regulatory region 461866	1769 bp proximal
Rr461867	regulatory region 461867	1792 bp proximal
Rr461868	regulatory region 461868	1896 bp proximal
Tssr106388	transcription start site region 106388	1268 bp upstream
Tssr112430	transcription start site region 112430	1730 bp downstream
Tssr112431	transcription start site region 112431	1749 bp downstream
Tssr112432	transcription start site region 112432	1788 bp downstream
Tssr112433	transcription start site region 112433	1813 bp downstream
Tssr112434	transcription start site region 112434	1970 bp downstream