rs218118211 SNP Detail

Summary

• ID
  rs218118211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCGGGTC AAAGTCACCC
  TAACTTAAAA AGTCAGGAAT TCTTCGTCCT TATATAGTCC ACGGCTAGAC ACTACGATCG
  TGCTCGCTTC GGCAGCACAT ATACTAAAAT TGGAACGATA CAGAGAAGAT TAGCATGGCC
  CCTGCGCAAG GATGACACGC AAATTCGTGA AGCGTTCCAT ATTTTGGCTC TGCTTACTAT
  R
  AACAGGTCAT TGGACCAAAT TCCAAACAAT AACTTTTGAC TTCTCCCTCA CAGCGTCTCC
  AAGTCAACCC AGCGCGTCAT TCTTAAATCC TATCCTAGCT TTTTACTACT GTATCTGGCC
  CCTAGTGCTT GTTTTCATCA ACTAAAATCT GCTGTTATTA AATTTGGGGA ATGCATCATT
  GGCCAGTGTT TCTTCCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324040181	CHEV_12_53704896	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218118211					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650692 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1587 bp upstream
Cpgi4596	CpG island 4596	116 bp distal
Cpgi4597	CpG island 4597	732 bp proximal
Gm23296	predicted gene, 23296	576 bp downstream
Gm24859	predicted gene, 24859	15 bp downstream
Gm35239	predicted gene, 35239	928 bp upstream
Gm59577	predicted gene, 59577	516 bp downstream
Rr369517	regulatory region 369517	775 bp upstream
Rr403283	regulatory region 403283	within coordinates
Rr403284	regulatory region 403284	507 bp upstream
Rr466025	regulatory region 466025	1602 bp distal
Rr466026	regulatory region 466026	1026 bp distal
Rr466027	regulatory region 466027	445 bp proximal
Rr466028	regulatory region 466028	974 bp proximal
Tssr116285	transcription start site region 116285	1561 bp upstream
Tssr116286	transcription start site region 116286	1538 bp upstream