rs218118708 SNP Detail

Summary

• ID
  rs218118708
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGATAGCC CCTGTCTCAA AAAAGAAGGT ACATGGCTCT
  TGAAGAAGGA CATCTAAGAC TGTCCTCAGG TCTTCACACA CACACACACA CACACACACA
  C
  CTGTACATAC CCAAACAAAT ATCCAATCTA TTTCCCAAAT GACTCTACCA GTTTTGTAGT
  TAGAAACCAT AGTCAATGTC TCTCTACCCT CTCCAGGAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341600	CHEV_13_53473894	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218118708					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	946 bp distal
Rr403780	regulatory region 403780	922 bp downstream
Rr480032	regulatory region 480032	638 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	1160 bp upstream
Tssr122583	transcription start site region 122583	1152 bp upstream