rs218119588 SNP Detail

Summary

• ID
  rs218119588
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58894212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC AGGATGTTGG GGGGCTGTCA
  A
  ACAGAGTTGA GAAGTTGTTC AAGGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323695610	CHEV_11_58816888	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218119588					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58894212 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	466 bp distal
Tssr101782	transcription start site region 101782	436 bp downstream
Tssr101783	transcription start site region 101783	417 bp downstream
Tssr101784	transcription start site region 101784	405 bp downstream
Tssr108189	transcription start site region 108189	1193 bp upstream
Tssr108190	transcription start site region 108190	1155 bp upstream
Tssr108191	transcription start site region 108191	1020 bp upstream
Tssr108192	transcription start site region 108192	1001 bp upstream
Tssr108193	transcription start site region 108193	985 bp upstream
Tssr108194	transcription start site region 108194	937 bp upstream