rs218121956 SNP Detail

Summary

• ID
  rs218121956
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33199164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACACAC ACGCTGCATT
  ACTTTCAGTA TGCCTTACTA GTTTAATGGC TGGGCACTTC CGGACGTCCC CCAAGCTAGC
  ACACATTCCC CTCCAATATT CCAGAGTTAA CACTTTCTAA GTCTGTATTT TATCTTTGCC
  GCCCTTTTTC CTTCTGGGCA GGCTTCCCAT GCGGCTACTT TCCCTCTGCA CCTAGATTTC
  K
  GTCGTCTCAC CCTCCTGCCC CTTCACAGTG TGGTCCATCC TCTGACCTTC TCATGGCGAA
  TCCTTCTTCT CTCCCAATCC CCTGCCCCCG CCTCCTTTGT TTCTTGCCCA GGAATCCTAA
  AAGTCCTGCC TCTGTCCCCT TGCCCAGCCA TTGGCCTTTG GCAACTTTAT TTCCCAATCA
  GAGCCAACTG ACGGCAGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357482749	MGP_WTSI_3_33043937	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218121956					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357482749	MGP_WTSI_3_33043937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33199164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13064	CpG island 13064	1388 bp distal
Pex5l	peroxisomal biogenesis factor 5-like	1768 bp upstream
Rr575054	regulatory region 575054	1944 bp distal
Rr575055	regulatory region 575055	1443 bp distal
Tssr32954	transcription start site region 32954	1991 bp upstream
Tssr32955	transcription start site region 32955	1929 bp upstream
Tssr32956	transcription start site region 32956	1856 bp upstream
Tssr32957	transcription start site region 32957	1829 bp upstream
Tssr32958	transcription start site region 32958	1795 bp upstream
Tssr32959	transcription start site region 32959	1749 bp upstream
Tssr32960	transcription start site region 32960	1723 bp upstream
Tssr32961	transcription start site region 32961	1703 bp upstream