rs218121989 SNP Detail

Summary

• ID
  rs218121989
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78701328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTATGTGA ACTTGAGTGG
  GCTGTCATTC TGTGTGTGGT ATAGCCACGC AGTTTCCCTG CAACTATCGA CTCTAAAGCC
  AGCAGACTTT GTTCTGTGCT GTGGTGACTC GAGGATGGCC TCAAGAAGAG CTGGGCACTC
  ATTCTGACAG ATGAAGGGCT TGGCAAGGGA AATCTGGTGA GTCCCAGTGA AATGGCTTGT
  W
  GGAGAGGTTT CCTTCTGTGA GTCATGTGTG AGTGAAGTTG ACAGTTCTAG AGATCAGCAG
  AGCTTCTCTC CAGAAAACGG AATTGTCAGA AATAACAATA TTTACCAGAA AATTGGTAAA
  CTCCAGGCTT GGCTCTAGTG GGAAGCAGTT CTTAATGTGT GCTTTAAATT GGCTTACAAT
  CTGTAAGAAG AGGACTTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354575714	MGP_WTSI_2_78711141	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218121989					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575714	MGP_WTSI_2_78711141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78701328 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11839	CpG island 11839			1029 bp distal
Rr559887	regulatory region 559887			1927 bp distal
Rr559889	regulatory region 559889			1296 bp distal
Rr559890	regulatory region 559890			1769 bp distal
Rr559891	regulatory region 559891			1023 bp proximal
Tssr18523	transcription start site region 18523			1875 bp downstream
Tssr18524	transcription start site region 18524			1842 bp downstream
Tssr18525	transcription start site region 18525			1821 bp downstream
Tssr18526	transcription start site region 18526			1722 bp downstream
Tssr18527	transcription start site region 18527			1663 bp downstream
Tssr18528	transcription start site region 18528			1608 bp downstream
Tssr18529	transcription start site region 18529			1473 bp downstream
Tssr18530	transcription start site region 18530			1416 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3			Intron
				Noncoding-Transcript-Variant