rs218127856 SNP Detail

Summary

• ID
  rs218127856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89280994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAACCT CAGAGACGAG
  ATGTGGCAGT TGTTTAGAAG ATTGGAATAT GATGTTCCCA GTAAAAGTGT TAGCAGAGGC
  AAAAGCCCTG AGATGGAGGT GAGTAAGACA GGGAAATGGG GAGAAGCAAG TCAGAGGAGA
  CCTCAAGGAC AGCACAAGGT GAAGTGGGAT GAGATGAGAA GCTGGCAGGA GCCAGGCTGG
  R
  CTTAACCAAG GCCTCCTGAC AACTTAGGAG TTATCCCATA CACAGAGCGA TGTATTTCCT
  TTAGAAGGAA TCTCTTGAAC ACTAAGTGGA GGAAGTACAC ACTTAAATTC AGGGAGAAGT
  GGACATCAAG GTGTGAGTGA CCTAACATCT ATGGTCTATG GCTGGTTCCA TGGGGTTCCT
  AGAAACTTAC TTAGGAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372259721	MGP_WTSI_7_96780296	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218127856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372259721	MGP_WTSI_7_96780296	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89280994 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	311 bp downstream
Cpgi19393	CpG island 19393	825 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	498 bp upstream
Rr650822	regulatory region 650822	459 bp proximal
Rr650823	regulatory region 650823	1328 bp proximal
Tssr67672	transcription start site region 67672	619 bp upstream
Tssr67673	transcription start site region 67673	631 bp upstream
Tssr67674	transcription start site region 67674	697 bp upstream
Tssr67675	transcription start site region 67675	713 bp upstream
Tssr67676	transcription start site region 67676	770 bp upstream
Tssr67677	transcription start site region 67677	903 bp upstream
Tssr67678	transcription start site region 67678	1089 bp upstream
Tssr67679	transcription start site region 67679	1165 bp upstream
Tssr67680	transcription start site region 67680	1219 bp upstream