rs218145325 SNP Detail

Summary

• ID
  rs218145325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTGGGG AGGAGATGGG
  GTAATGAGTA GCAGCAGGAA GGTCTCAAGT GGGCTGAGGT GGGGTGCAGA AAGGCAGCTC
  AGCCCTTCCC TTCAGCAGGT ACTATCCAGG GCCACTAGAA GCTGGAGGGC AGGGTTGTTC
  TAGTGGGATG GATCCACTAC TTATTTGCCT TTTGAGGGAG GCCCTTCCCC TAGTGCTGAC
  Y
  ACCTTCAGGG TGAGGGAACC CTATTCTCTT CTGCCTTACC CCATACCCTT ACTCCACACT
  TACCGAGAAG CAGGCAGCAA GGCACTCCGC TGGGTCTGCT GCTGGCAGCA GTGTGGCTGA
  GGAAGTAAAA CTGCCTGGGT CCACCCATAG GCCTGCCTCC TGAACAGGGC CCGCCCTGCT
  GTTAGCCTGC CAGGCCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877942	MGP_WTSI_9_108961639	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218145325					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877942	MGP_WTSI_9_108961639	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888193 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	622 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	494 bp upstream
Rr686956	regulatory region 686956	1260 bp distal
Rr686957	regulatory region 686957	116 bp proximal
Rr686958	regulatory region 686958	537 bp proximal
Rr686959	regulatory region 686959	683 bp proximal
Shisa5	shisa family member 5	1348 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr87221	transcription start site region 87221	1865 bp downstream
Tssr87222	transcription start site region 87222	1816 bp downstream
Tssr91571	transcription start site region 91571	1402 bp upstream
Tssr91572	transcription start site region 91572	854 bp upstream
Tssr91573	transcription start site region 91573	720 bp upstream
Tssr91574	transcription start site region 91574	487 bp upstream
Tssr91575	transcription start site region 91575	440 bp upstream
Tssr91576	transcription start site region 91576	354 bp upstream
Tssr91577	transcription start site region 91577	91 bp downstream
Tssr91578	transcription start site region 91578	551 bp downstream
Tssr91579	transcription start site region 91579	586 bp downstream