rs218165330 SNP Detail

Summary

• ID
  rs218165330
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79594576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aggcagaat gataaataCT TACTAGTTAT
  AGCATGTCGG GCAATAATAG CACAAGCCCT CTGGAGGGCG TTTCCTTCGC CAGGCTGTGC
  TATCCTACTT ACAGGAGTGC ACTTAAGAAG GCTGGTGAGT GGGACCTTTG ACTGCCCGGT
  C
  GGCATCACAG CCCTGCACCA TGGGGAGGGC CACCCTCTCC TCTCTCCTGG AACAGATGCC
  ATGGCCATAG GATTCAGAGA CCTAATTTCC TTACTAAAAC TTTAAAGACt tttttttttt
  taattacaaa tttaaataCT AGATCTAgga                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760568	CHEV_11_79517252	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218165330					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79594576 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	126 bp downstream
Cpgi3370	CpG island 3370	56 bp proximal
Gm11205	predicted gene 11205	820 bp upstream
Gm74173	predicted gene, 74173	within coordinates
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	900 bp upstream
Rr402778	regulatory region 402778	670 bp upstream
Rr452325	regulatory region 452325	within coordinates
Rr452326	regulatory region 452326	76 bp distal
Rr452327	regulatory region 452327	684 bp proximal
Rr452328	regulatory region 452328	882 bp proximal
Tssr109524	transcription start site region 109524	720 bp downstream