rs218169767 SNP Detail

Summary

• ID
  rs218169767
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAATATT TGCAGAAAAT
  ATTCAATAAA GTGAGTCTTT GCACTTGAGA TCTCTGTCTT TCTTACTAAA TGGTAGTAAT
  CAGTTGTTTT TCCAGTTACC TGGGTTTCTC TTCTAAAGAA GTTAAATGTT TAGTTGCCCT
  GAAATCCACC ACACTTAAAG GATAAATAAA ACCCTCCACT TGCCCTGGTT GGCTGTCCAC
  K
  ACATGGCAGT CCTTTCTAAG GTTCACGAGT ACTATTCATG GCTTATTTCT CTGGGCCATG
  GTAGGTTTGA GGAGGCATAC TTCCTAGTTT TCTTCCCCTA AGTCGTCAAA GTCCTGAAGG
  GGGACAGTCT TTACAAGCAC ATGTTCTGTA ATCTGATTCA ACCTACCCAG TAAACTTGGC
  GAAGCAAAGT AGAATCATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815809	CHEV_6_70677113	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218169767					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704103 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	153 bp upstream
Igk	immunoglobulin kappa chain complex	365 bp downstream
Igkc	immunoglobulin kappa constant	365 bp downstream
Rr158	regulatory region 158	1168 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1684 bp downstream
Rr399685	regulatory region 399685	1272 bp downstream
Rr399686	regulatory region 399686	308 bp downstream
Tssr1880	transcription start site region 1880	268 bp downstream
Tssr56956	transcription start site region 56956	1286 bp downstream
Tssr56957	transcription start site region 56957	647 bp downstream
Tssr56958	transcription start site region 56958	631 bp downstream
Tssr56959	transcription start site region 56959	613 bp downstream
Tssr56960	transcription start site region 56960	598 bp downstream
Tssr56961	transcription start site region 56961	582 bp downstream
Tssr56962	transcription start site region 56962	570 bp downstream
Tssr56963	transcription start site region 56963	523 bp downstream
Tssr56964	transcription start site region 56964	512 bp downstream
Tssr56965	transcription start site region 56965	500 bp downstream
Tssr56966	transcription start site region 56966	492 bp downstream
Tssr56967	transcription start site region 56967	472 bp downstream
Tssr56968	transcription start site region 56968	442 bp downstream
Tssr56969	transcription start site region 56969	418 bp downstream
Tssr56970	transcription start site region 56970	399 bp downstream
Tssr56971	transcription start site region 56971	387 bp downstream
Tssr56972	transcription start site region 56972	328 bp downstream
Tssr56973	transcription start site region 56973	317 bp downstream
Tssr56974	transcription start site region 56974	287 bp downstream
Tssr56975	transcription start site region 56975	250 bp downstream
Tssr61321	transcription start site region 61321	610 bp upstream
Tssr61322	transcription start site region 61322	462 bp upstream
Tssr61323	transcription start site region 61323	381 bp upstream
Tssr61324	transcription start site region 61324	304 bp upstream
Tssr61325	transcription start site region 61325	271 bp upstream
Tssr61326	transcription start site region 61326	258 bp upstream
Tssr61327	transcription start site region 61327	232 bp upstream
Tssr61328	transcription start site region 61328	154 bp upstream