rs218172789 SNP Detail

Summary

• ID
  rs218172789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59242902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgggactg gaattataac tagttgtgag
  ctgccacgtg gttgctgagT CCCCtgtttg gcttcttttg agaaacatct ttttgttttg
  gtttaatttt tttgagacag ggtttctctg tgtagccctg gctgccctgg aactcattct
  R
  tagaccaggc tgccctcaaa cttagagatc tgcttgcctg cctctgcctt ctgcgcgctg
  gaattaaagc atgggccacc acagccagcg agaaacatgg cttggccatt ctaaagtcgg
  aattttattt atgctattgc tcctgtctgt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323321811	CHEV_10_58869828	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218172789					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59242902 () rs orientation: forward

Symbol	Name	Function Class
Pla2g12b	phospholipase A2, group XIIB	within coordinates
Rr215348	regulatory region 215348	102 bp distal
Rr219809	regulatory region 219809	899 bp proximal
Rr219810	regulatory region 219810	1299 bp proximal
Rr224847	regulatory region 224847	1901 bp distal