rs218175327 SNP Detail

Summary

• ID
  rs218175327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22039713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGGCTGC TGGACGGCAT
  GATGTAGACC ATCCAGACAG GACTGACCTA TGCGGGGAGA GGAGAGGGAA GGAACGCGAG
  AGGGAGGGGC GGCTGCCTGT GGAAACCGGT TCTTCCAGGG AAGCGGAGCG GGACTTCGGC
  GTTCCCCTCG ATTTGCGCCG TCGCTCGGGC TGTTTGGAAA GAAGAGGGGA GGCGCTGTGC
  R
  TGCTGACTTG TACCTGGATC TGGGTGCACA GTGCGTATGC ACTCCTGTGC CGCTGGGCGA
  CTTCCATAAC GTCCGCTCCG GGGTTACTCC CAGAAACTCG TAGAAAGTAG AAGGGGGTGA
  GAAGAGGACA CACCCCCTTG CTCGGAGGGA CTTGGGAGAC TTTGAATTTC CCCTCCCCCC
  ACTTTTCCGC AGAGCTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390501731	MGP_WTSI_14_22808867	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218175327					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390501731	MGP_WTSI_14_22808867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22039713 () rs orientation: forward

Symbol	Name	Function Class
A330001L22Rik	RIKEN cDNA A330001L22 gene	within coordinates
Cpgi6226	CpG island 6226	1072 bp distal
Cpgi6227	CpG island 6227	within coordinates
Cpgi6228	CpG island 6228	967 bp proximal
Gm62264	predicted gene, 62264	224 bp upstream
Rr406381	regulatory region 406381	1214 bp proximal
Rr407248	regulatory region 407248	1571 bp proximal
Rr488634	regulatory region 488634	110 bp distal
Rr488635	regulatory region 488635	within coordinates
Tssr124462	transcription start site region 124462	287 bp upstream
Tssr127701	transcription start site region 127701	1763 bp upstream
Tssr127702	transcription start site region 127702	1748 bp upstream
Tssr127703	transcription start site region 127703	1636 bp upstream
Tssr127704	transcription start site region 127704	1209 bp upstream
Tssr127705	transcription start site region 127705	152 bp upstream
Zfp503	zinc finger protein 503	44 bp upstream