rs218191315 SNP Detail

Summary

• ID
  rs218191315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109750315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTCTTT GGAAATAGAG
  AATTCAGGCA GAAAGAGAAC TGACTTTACC AGAACCACAT AGAATTATGG TTATTATTAT
  TATTTTTAAG AGTATTAGAG TTTGAGGAGT GTGCTAACCA AGGTCTTTTC AGATGAGTTA
  TATTATTAGT TAAAAAGTTA GGATTTCACT GTTTAGTTTA TTTGTAAAGA TTTGTAAAGA
  Y
  TAACGAATAG TCTTGCCCCA TAAGGCAAAG GGCCTGTTTG ATGCGGTACC TAATGTCACG
  TTTTTATGGG AACAAGCTTC TCTAAGAAAG AGAGCATCAC ACAACCTGTA GATCTCACTG
  GAGACCATGA AACACCCTAT CTTCAAGGTC CAGCCTTAGG GGAGTTACTA CCCATAGCTT
  GTGGAATGGG TAGATAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355231001	MGP_WTSI_2_109760127	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	C	T	T	T	C	C	T	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs218191315					SNP	T	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	C	T	T	T	C	C	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355231001	MGP_WTSI_2_109760127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109750315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	1109 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562510	regulatory region 562510	384 bp distal
Rr562513	regulatory region 562513	1759 bp distal
Rr562514	regulatory region 562514	51 bp proximal