rs218195241 SNP Detail

Summary

• ID
  rs218195241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23805469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAATTAAAC TGCACAAATC
  TGCTATAGCT AACCTATTTA AGCACGATCG CTATCAAACA TGGGGGAACA CAGAAAAAAA
  AGTACTCTAG TTGGGTTTGT ATGCTTGATT TCAGCAGTCA GAACTGAGAT GAGATGCGGG
  TGGGGTTGTC AGGACATCGA TCCTGCTCTT TACGCACTGA ATCGCTCAAT GCTTAAGATT
  Y
  TATCTCTAAA TCATTCTGCT ATCTCCCTTA AAAGTTATCG ACGTGGCAGC CGGGAGTAAA
  CTACTTCATT CCCATGGTCT CTAAGGGTCA CTTGTGGGAT ATGAACTTAC CCACCACCAC
  CACACATACA GGAGATTATG TACAGACCTT CAGATAGCTA AGCTAGAGTT AACACCATTG
  CGCACACCCA CATATCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324290402	CHEV_13_23713355	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218195241					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23805469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	28 bp distal
Cpgi5368	CpG island 5368	547 bp proximal
Gm11398	predicted gene 11398	437 bp upstream
H1f4	H1.4 linker histone, cluster member	291 bp downstream
H2bc6	H2B clustered histone 6	378 bp upstream
Rr403657	regulatory region 403657	116 bp downstream
Rr475906	regulatory region 475906	403 bp distal
Rr475907	regulatory region 475907	within coordinates
Rr475908	regulatory region 475908	675 bp proximal
Rr475909	regulatory region 475909	1062 bp proximal
Tssr118843	transcription start site region 118843	365 bp upstream
Tssr118844	transcription start site region 118844	509 bp upstream
Tssr121728	transcription start site region 121728	371 bp upstream
Tssr121729	transcription start site region 121729	403 bp downstream
Tssr121730	transcription start site region 121730	451 bp downstream
Tssr121731	transcription start site region 121731	504 bp downstream
Tssr121732	transcription start site region 121732	531 bp downstream
Tssr121733	transcription start site region 121733	1062 bp downstream