rs218219896 SNP Detail

Summary

• ID
  rs218219896
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTTGAGGT TCTAGCAAGG
  GGAAGGGGTT GGTTGGTGGC TTACAGCTAC TCACAACTCT AGTTGTGTTC CTAACCGCTG
  AGCCATCTCT CCAGTACCAG CATAGGAGTC TTCATAATTA GCTCCTGGCC CTGCTTAGAG
  ATCTATCCTT TCTTTTGATA ATGCCATTTA ACCACCAAAT TCTTTCTTTA AATGTACTAG
  K
  CTTGCTCTCA TTCACCTTAA GCCCTCTACA TGAACTGTTC ACTCCACCAG AAGAGCTCTC
  CCTACAAAAC CCCAAATAAT AGTTGGCTGC CTGAATTCTT CAAGTTTCCA CTCCAACTTG
  ATACCCTCAT TGTATCCTAC TCTAACCCTT CATAATCTTT CATGCTCTCA TAACCTCCAC
  TGATCATTTC TTTCTCATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388620	CHEV_7_116076993	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218219896					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	787 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	545 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	936 bp upstream
Rr400539	regulatory region 400539	678 bp upstream
Rr652951	regulatory region 652951	776 bp distal
Rr652952	regulatory region 652952	448 bp proximal
Rr652953	regulatory region 652953	668 bp proximal
Tssr68456	transcription start site region 68456	926 bp upstream
Tssr68457	transcription start site region 68457	1038 bp upstream