rs218220214 SNP Detail

Summary

• ID
  rs218220214
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19061578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTCCAT ACTTGTCTTT
  AAATAAAGAT TAAAGAAGAC TGATAAAAAT TAAATGTATG ATATGGTTTC AATAGTAATT
  AATGGAAACA TACTTACTAT AAATTTTATA TAAGAATATT ATCTTTAACT TCCAGCTCTT
  TGGGAAGGTG ATGTTCAGAA AGGAATGTTC CTAAAATTGA GATAAGAAGC TATGCATTAT
  G
  CTAGAAGTTA TTGGAAATAT TGGGCAGGAA TGAGAAGAAT ATCATGACCA CTGGGGCTTG
  CTGAGGTATG CAATAACTTG AGAATATTTA AAGAAGCTGC CTTATATAGA TTCTCTTAAT
  AAAACACCTC TTCCCCAGGA TCAGGGAATA TGAACAAGAG CATGTAGAAT CATTGTAGGA
  GGCAGATGTG CTAGATGATG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss395552156	MGP_WTSI_16_19242921	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs218220214					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552156	MGP_WTSI_16_19242921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19061578 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	697 bp upstream
Gm35545	predicted gene, 35545	1494 bp downstream
Gm56600	predicted gene, 56600	140 bp downstream
Iglv3	immunoglobulin lambda variable 3	1149 bp upstream
Rr512770	regulatory region 512770	786 bp distal
Tssr137404	transcription start site region 137404	1569 bp downstream
Tssr137405	transcription start site region 137405	1544 bp downstream
Tssr140323	transcription start site region 140323	1720 bp upstream
Tssr140324	transcription start site region 140324	1118 bp upstream
Tssr140325	transcription start site region 140325	1092 bp upstream
Tssr140326	transcription start site region 140326	1014 bp upstream