rs218223606 SNP Detail

Summary

• ID
  rs218223606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51304833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGGCAC TAGGCGGTGG
  TGTGTGTGTG TGTGTGCGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  ACCAAAACAA TCCACTAACA GGAAAGTTAG GTAAAGGGCT CTCTGGGGGG AGTAGCAACC
  GCTCTTAAAC ACTAAACCAT CTCTCCAGTC TGAACTGTGA ATCTTGTTTT TTTTTTTTTT
  K
  TTTTGTTTTT TGTTTTTTAA TTTATTATAT GTAAGTACAC TGTAGTTGTC TTCAGACACA
  CCCGAAGAGG GCCTCAGATC TCATTACGGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA
  TTTGAACTCA GGACCTTTGG AAGAGCAGTC AGTGCTCCTA ACAGTTGAGC CGTCTCACCA
  GCCCCGAATC TTGGTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	SJL/J
ss357929632	MGP_WTSI_3_51201334	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	G	G	T	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	SJL/J
rs218223606					SNP	G	G	T	G	G	G	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357929632	MGP_WTSI_3_51201334	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51304833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	484 bp distal
Mgarp	mitochondria localized glutamic acid rich protein	865 bp upstream
Rr576308	regulatory region 576308	184 bp distal
Tssr33206	transcription start site region 33206	886 bp upstream
Tssr33207	transcription start site region 33207	861 bp upstream
Tssr33208	transcription start site region 33208	655 bp upstream