rs218234290 SNP Detail

Summary

• ID
  rs218234290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:87952040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTGGGG AGCCATCCCG
  GCCCCTGTGC AAACTCCGTT CTCCCTACAA TAAAAAACGG ATTAAAACTG CTGGAATGTG
  GCCACTGCCT GGAGCCCCCC AGCCGCAGGA GAAGGGGTTG TTAAATCAAG TCTTTGGCGG
  TAGTGAGCAC GTTTGGGAAG GGGGAGCGGG CTTGTTTTTA CTTTCCACCA TGGATTTTTG
  Y
  GGGTTTGTGC TGAAATCGCA AGAACGCACA CCCAAACAAA CTTATTTAAA CAGAGAGCAA
  GAGAAATCCA CGCTACCAAA GAAAAAAAAG AAGGGGGAAA AAAGCCTCCT GATAGCAATC
  TCTGGGACTG AACAGCCCCC AGCAACCTTA AATCCCTTTC CCTATCTACT CCGAGCCACC
  AACCTACCCC GCCCTCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362318129	MGP_WTSI_4_87679707	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218234290					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362318129	MGP_WTSI_4_87679707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87952040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14428	CpG island 14428	12 bp distal
Gm12631	predicted gene 12631	within coordinates
Mllt3	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	439 bp upstream
Rr90573	regulatory region 90573	1761 bp proximal
Rr101188	regulatory region 101188	within coordinates
Rr398326	regulatory region 398326	519 bp upstream
Rr398327	regulatory region 398327	1664 bp upstream
Tssr42372	transcription start site region 42372	1054 bp upstream
Tssr42373	transcription start site region 42373	1001 bp upstream
Tssr42374	transcription start site region 42374	981 bp upstream
Tssr42375	transcription start site region 42375	940 bp upstream
Tssr42376	transcription start site region 42376	515 bp upstream
Tssr42377	transcription start site region 42377	488 bp upstream
Tssr42378	transcription start site region 42378	430 bp upstream