rs218236965 SNP Detail

Summary

• ID
  rs218236965
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72437653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT GCTGCCAGTC CCCAAGGCCC
  C
  AAGTCGCCGT AAACGCACTC TGTTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323002565	CHEV_9_72378178	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218236965					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72437653 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	1097 bp proximal
Rfx7	regulatory factor X, 7	1869 bp upstream
Rr401508	regulatory region 401508	within coordinates
Rr401509	regulatory region 401509	1248 bp upstream
Rr682766	regulatory region 682766	within coordinates
Rr682767	regulatory region 682767	29 bp proximal
Rr682768	regulatory region 682768	106 bp proximal
Rr682769	regulatory region 682769	779 bp proximal
Rr682770	regulatory region 682770	1379 bp proximal
Rr682771	regulatory region 682771	1580 bp proximal
Tssr86008	transcription start site region 86008	1357 bp upstream
Tssr86009	transcription start site region 86009	1562 bp upstream
Tssr86010	transcription start site region 86010	1813 bp upstream
Tssr86011	transcription start site region 86011	1843 bp upstream