rs218259981 SNP Detail

Summary

• ID
  rs218259981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123060234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCATTCC CTGGACTGGC ATCCTGGACT GCATAAAAAG
  AGCCAGACAC AAGCACTGAT TGCTCTCTGC TTTCCTGACT GTGCCCGCAT AGTGATCAGC
  Y
  GCCTCAAGCT ACCGCATCAA GATGGATTAC TCCCTTGAAC TGTGGACCAA AATAAACATT
  TTCTCCTTTT AGTTGTGGTT GCCAGAGTAT TTTATCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320918499	CHEV_3_122969503	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218259981					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123060234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	360 bp proximal
Gm56815	predicted gene, 56815	within coordinates
Gm66521	predicted gene, 66521	within coordinates
Rr77168	regulatory region 77168	166 bp proximal
Sec24d	SEC24 homolog D, COPII coat complex component	870 bp upstream
Tssr31540	transcription start site region 31540	1798 bp downstream
Tssr31541	transcription start site region 31541	1767 bp downstream
Tssr31542	transcription start site region 31542	596 bp upstream
Tssr31543	transcription start site region 31543	623 bp upstream
Tssr31544	transcription start site region 31544	860 bp upstream