rs218274936 SNP Detail

Summary

• ID
  rs218274936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143908955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTCCTG GGGGGGGGGG
  TATAGATAAT ATGCGAGGAG GCACTATTGA GGCACACACA AGTTAAATTC AAGCCAGTCT
  TGATGTCACG AAAAACTGCT TTTAAACATT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCCTGGAGT AGAATATAGG AATCAATTTA TAAAGCTTAG
  Y
  TTAAACCGAT TAATTTGTTG CCTCCAATCC GGAGTCCAAT AAAGTCCTAG TGTTTCTCCA
  GTCACTTATT CTATAAAAAG ATCAAGTTAT TTACTGCCAA TTAAGCAGCT TGTTTTGTCT
  TTGTCCTCTG TAAGGCGAGA GTGTGGGCTC TCCCAGGCTC CCAGCTATCT GCTCAAGACA
  TTCAGCTGAT ACCTCAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062405	MGP_WTSI_3_143866158	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218274936					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062405	MGP_WTSI_3_143866158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143908955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	533 bp distal
Cpgi13895	CpG island 13895	1356 bp proximal
Lmo4	LIM domain only 4	Intron
Rr406521	regulatory region 406521	within coordinates
Rr586599	regulatory region 586599	1188 bp distal
Rr586600	regulatory region 586600	308 bp distal
Rr586601	regulatory region 586601	693 bp proximal
Tssr35963	transcription start site region 35963	1241 bp upstream
Tssr35964	transcription start site region 35964	1225 bp upstream
Tssr35965	transcription start site region 35965	849 bp upstream
Tssr35966	transcription start site region 35966	827 bp upstream
Tssr35967	transcription start site region 35967	579 bp upstream
Tssr35968	transcription start site region 35968	1664 bp downstream
Tssr35969	transcription start site region 35969	1692 bp downstream
Tssr35970	transcription start site region 35970	1762 bp downstream
Tssr35971	transcription start site region 35971	1971 bp downstream