rs218276673 SNP Detail

Summary

• ID
  rs218276673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCATTTA GAACTGTCAG
  TCAAGCCCAG GACTGATGTT ACATATACAC TGTCCTGCAC ACATGGTGAA AACCTGTGTT
  TCTAACTGTT GGAAACCACT CTAGCAGGAC AACTTAAAAC CAAAATCAGA AGCAAGACAA
  ACAAACAAAC AAACAACAAC AACAACAAAA AACCAAAACA AGAAAAAGAA AAAAAAAGTG
  R
  TGACTTGTCA ACACACACCT TGAGGTCAAA TTTACCAAGA ATTTACTGTA ATTGGCTTCT
  ATTAAATGAA CTTTTTAAAA AAGGATGTCT GCATAGCTAA ATTTAAATGG AATTCACCAC
  TTTTTTCTAT GAAGAGTGAA TTTCTGGAAG TTTTGGTGTC TGGCCATTAA TCTTTCTTTA
  CTTGCAGTAC TCATCTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577286	MGP_WTSI_14_75577755	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218276673					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577286	MGP_WTSI_14_75577755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415388 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	62 bp upstream
Rr404213	regulatory region 404213	966 bp downstream
Rr404214	regulatory region 404214	1743 bp upstream
Tssr4479	transcription start site region 4479	1785 bp downstream
Tssr126623	transcription start site region 126623	1343 bp downstream
Tssr126624	transcription start site region 126624	1305 bp downstream
Tssr126625	transcription start site region 126625	1151 bp downstream
Tssr126626	transcription start site region 126626	1126 bp downstream
Tssr126627	transcription start site region 126627	1044 bp downstream
Tssr126628	transcription start site region 126628	794 bp downstream
Tssr126629	transcription start site region 126629	103 bp downstream
Tssr126630	transcription start site region 126630	82 bp downstream
Tssr126631	transcription start site region 126631	1630 bp upstream
Tssr126632	transcription start site region 126632	1855 bp upstream
Tssr129769	transcription start site region 129769	1345 bp upstream
Tssr129770	transcription start site region 129770	1266 bp upstream
Tssr129771	transcription start site region 129771	453 bp downstream
Tssr129772	transcription start site region 129772	1309 bp downstream