rs218278017 SNP Detail

Summary

• ID
  rs218278017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27260047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTAAGA GTCTGGACAG
  GGCCCTTCCT TACTCCAGAG TCCTCAAACT ACCCGTGGAA CTGGCCGGCC CAGCCCAGGA
  TCCTCTGCTC CCGTGAGGTC AGGGTAACAC AGGTCCTGAA TGTGTTCCCC TGTTCTTGCT
  GTACATGAAG TCCTGGGCTC CCTGGCAGGC TCCAGGGCTG TCAGGATCCA CAGCAATTGC
  Y
  CGGGGGGGGG GGGGGGGCCG GGGCGGGGGG GGGGCTGTTT CCATGGCACC AGGCAGGCTT
  GGTGGGTGGT CCTAGGGGGC ATTCTGGGAT AGGAGTGTAT GGGGAGAGTG AATCTGTCGG
  GTTAACCACT TGGCTAACCT CCTCACAACT GCATCCAGAT TTTACAGCAC TGCCTAAGCC
  AACCTAGGTG ACTCAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss397913064	MGP_WTSI_17_27178018	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs218278017					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397913064	MGP_WTSI_17_27178018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27260047 () rs orientation: forward

Symbol	Name	Function Class
Gm65707	predicted gene, 65707	1535 bp upstream
Rr392460	regulatory region 392460	within coordinates
Tssr146998	transcription start site region 146998	1521 bp upstream