rs218279324 SNP Detail

Summary

• ID
  rs218279324
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44056577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA CATGAGTCCA ATCCTAGGGG
  C
  ATGGTTTCTG TCTAAAGGTA ACAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325817151	CHEV_19_44142628	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218279324					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44056577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	889 bp proximal
Erlin1	ER lipid raft associated 1	within coordinates
Gm59010	predicted gene, 59010	1722 bp upstream
Rr548150	regulatory region 548150	1378 bp proximal
Rr548151	regulatory region 548151	1733 bp proximal
Tssr159429	transcription start site region 159429	1222 bp downstream
Tssr159430	transcription start site region 159430	1508 bp downstream
Tssr159431	transcription start site region 159431	1552 bp downstream
Tssr159432	transcription start site region 159432	1598 bp downstream