rs218280463 SNP Detail

Summary

• ID
  rs218280463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86286155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAAAAA TTGCACGCAT
  TTTCAGTCAC TTTGCCTTTG GCCACCACCT TTTTCTTACT AAAGGACACA AGCATAAAGA
  CTTCTTCTTG GCCAGGCATG GCATTCTCCT GGCAGTTTTT TCTGCGAACC GCGCATAATT
  TTTTTTTCCT TCTCACAGAT AACTGAGCAG ACAGAACTCT ACACCAAGAA ACAGCCACAG
  R
  TTATAAAGTC TCCTAGTCGT GGCCATCTAT TTTCTGGCAT CTTCCACAAA AAAAAAAAAA
  AAAAAAAAAA AAAAACCCAG TTAAAGGGAT CCCTTTAAGT TATTTGCTGG GGAAGGGGGT
  ATCTCGAAAT CACCTCTTAA AGCAGCACCA CGTAACCCAA CTGCTTCCCA CTTTCTCTCG
  CTTCCAGCCC CACCACGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss350367749	MGP_WTSI_1_88255008	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs218280463					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367749	MGP_WTSI_1_88255008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86286155 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	1151 bp upstream
Cpgi503	CpG island 503	119 bp proximal
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	325 bp distal
Gm71192	predicted gene, 71192	1219 bp downstream
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	882 bp upstream
Tssr142	transcription start site region 142	1402 bp downstream
Tssr7745	transcription start site region 7745	1800 bp downstream
Tssr7746	transcription start site region 7746	1372 bp downstream
Tssr7747	transcription start site region 7747	1320 bp downstream
Tssr7748	transcription start site region 7748	1139 bp downstream
Tssr7749	transcription start site region 7749	1120 bp upstream
Tssr7750	transcription start site region 7750	1205 bp upstream
Tssr12775	transcription start site region 12775	1969 bp upstream
Tssr12776	transcription start site region 12776	1782 bp upstream
Tssr12777	transcription start site region 12777	1361 bp upstream
Tssr12778	transcription start site region 12778	1284 bp upstream
Tssr12779	transcription start site region 12779	1265 bp upstream
Tssr12780	transcription start site region 12780	1212 bp upstream
Tssr12781	transcription start site region 12781	1164 bp upstream
Tssr12782	transcription start site region 12782	1089 bp upstream
Tssr12783	transcription start site region 12783	1055 bp upstream
Tssr12784	transcription start site region 12784	1028 bp upstream
Tssr12785	transcription start site region 12785	999 bp upstream
Tssr12786	transcription start site region 12786	201 bp upstream
Tssr12787	transcription start site region 12787	43 bp downstream
Tssr12788	transcription start site region 12788	537 bp downstream
Tssr12789	transcription start site region 12789	585 bp downstream
Tssr12790	transcription start site region 12790	925 bp downstream
Tssr12791	transcription start site region 12791	1048 bp downstream
Tssr12792	transcription start site region 12792	1518 bp downstream