rs218285880 SNP Detail

Summary

• ID
  rs218285880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45355203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGACTCTC CATGAGCTCA
  TGAACCTGGG AGCAGGTCCA CGGCAATGGC GCGGCCTCTG AGCGACAGGA CCCCGGGCCC
  CCTGCTGCTG GGTGGCCCGG CTGGGGCCCC CCCTGGCGGG GGAGCGCTGC TTGGGCTGAG
  GAGCCTTCTG CAGGGAAACA GCAAGCCCAA AGAACCGGCC AGCTGTGAGT TCTAGTCCCA
  Y
  TGTGTTAGGG ACTCAACTGT TGGGGTGGTG GTCCACGGCA CCTATCAGCT AGGTGTCCCA
  TCTTTGCTAG TCTTCATTAG GTCACTTAGG TCTTCCAGTC CATCAGCCTC CAGGACCAAA
  TCTGACGCCT GGAGGGCCTA AGGGTCAAGT CCCTGGAGTG TTCCTACTTG AGGACAGAGT
  TTAGGTGCCA GACCCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371182935	MGP_WTSI_7_52961149	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218285880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371182935	MGP_WTSI_7_52961149	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45355203 () rs orientation: forward

Symbol	Name	Function Class
Car11	carbonic anhydrase 11	1097 bp downstream
Cpgi19081	CpG island 19081	111 bp distal
Cpgi19082	CpG island 19082	721 bp proximal
Dbp	D site albumin promoter binding protein	within coordinates
Rr400318	regulatory region 400318	764 bp downstream
Rr646547	regulatory region 646547	485 bp distal
Tssr66612	transcription start site region 66612	487 bp downstream
Tssr66613	transcription start site region 66613	472 bp downstream
Tssr66614	transcription start site region 66614	430 bp downstream
Tssr66615	transcription start site region 66615	387 bp downstream
Tssr66616	transcription start site region 66616	356 bp downstream
Tssr66617	transcription start site region 66617	326 bp downstream
Tssr66618	transcription start site region 66618	247 bp downstream
Tssr66619	transcription start site region 66619	412 bp upstream
Tssr66620	transcription start site region 66620	451 bp upstream
Tssr66621	transcription start site region 66621	1349 bp upstream
Tssr72444	transcription start site region 72444	1126 bp downstream