rs218286365 SNP Detail

Summary

• ID
  rs218286365
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180596781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCTCT AATCCTGCAG
  GGACTTGTCT CAGAGGCTGG CATCTGAGGA GCCTCCTGGT CCTAGTGCAC TCCTTACCCC
  AGATTGAGAA TTTGCCCTTA TGCATGAAAT CTACAACCCG AAGCCGGATC TTTCTTTTCA
  GTAAAAGAGC TCTATCCTGC CCATAAGCAA ACTTGCTGGA AACAAACGAA CAAACAAACA
  C
  ATAAACAAAC ACATGTAAAA TGTCCCAGAG AATAAGATGC AAGGAGGCAA ATGACTCAAC
  AGTTAGGCTA GGGGATTTGG ATATGAATTC TGTAAAAAAT TACACTGGTG GGGCTAGAGA
  TGTGGCTCAG CGGCTAAGAA CACTGACTGC TCTTTCAGAG GTCCCTGAGT TCAATTCCCA
  GAAACTTCAT GGTGGCTCAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss352593520	MGP_WTSI_1_182699347	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs218286365					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352593520	MGP_WTSI_1_182699347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180596781 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	440 bp distal
Gm38293	predicted gene, 38293	560 bp upstream
Rr424564	regulatory region 424564	581 bp distal
Rr424565	regulatory region 424565	1430 bp distal
Rr424566	regulatory region 424566	1116 bp distal
Rr424567	regulatory region 424567	66 bp distal
Rr424568	regulatory region 424568	222 bp proximal