rs218290969 SNP Detail

Summary

• ID
  rs218290969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115150778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGAAACG GGGTAACCGA
  CAAGCAGCAA ACAGTCGTTT AAAACAAAAA CAAAAAAACC CTCCAACGAC GGGTGTTTTA
  CCACTCCATT TACTTTGAAA GCAGGACAAA ATGGAACTTG CATAAACACT TAGTCATCAG
  TACGCTCTGG AAGTTACAAA CCACCTCGTT CGCAAATTCT AATCCGTATC CGAGTTCCTA
  Y
  TTGGCGAAGA AAGAAGAAGG GCTGATGGTC TCGGAGACCA CAGAGTGAAA ACACCTGGTG
  TCCCCAGCCG AAGCCCATCA GAGGGGAAAA CCAGCACGCA GACCGGGGGA CTCCCCGACC
  TGCGCAGCCT CCACCGGCAA CTGGGGACTT TTCCGGGTCC TCTCCCTCCC CACTGTGGGT
  CTTGACATCT ACCGTGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484101	CHEV_10_114751929	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218290969					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115150778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	773 bp upstream
Gm67120	predicted gene, 67120	756 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	591 bp upstream
Rr402238	regulatory region 402238	1287 bp upstream
Rr439192	regulatory region 439192	1599 bp distal
Rr439193	regulatory region 439193	695 bp proximal
Rr439194	regulatory region 439194	708 bp proximal
Rr439195	regulatory region 439195	767 bp proximal
Rr439196	regulatory region 439196	933 bp proximal
Tssr95806	transcription start site region 95806	158 bp upstream
Tssr95807	transcription start site region 95807	210 bp upstream
Tssr95808	transcription start site region 95808	767 bp upstream
Tssr95809	transcription start site region 95809	799 bp upstream
Tssr99318	transcription start site region 99318	2 bp downstream
Tssr99319	transcription start site region 99319	36 bp downstream
Tssr99320	transcription start site region 99320	634 bp downstream
Tssr99321	transcription start site region 99321	673 bp downstream
Tssr99322	transcription start site region 99322	744 bp downstream