rs218318662 SNP Detail

Summary

• ID
  rs218318662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85706689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTACCC TGGGCCTGCC
  AAATTCTGCG CCTGGGAAGA GGAACCTCGG CAAGCGACCC TTGGGGAAGT CACAACCCAG
  CTACAGACGC TTCTAGTCAT AGTCTGATCT CCCCCATCTA GAAATGGTTC AGCCTGCAAC
  CATCGGCGAC TAATAAGCCT GGCAGCCGAG GACTGTTCCA TTGGCCGGCT GGAGGGGGAT
  R
  CAGCCTGGGA GCGGGGCCTC GTCACCAAGG CAACAGGCTG GAGTCCGTGA ATTAGATTGG
  GGGCGGGGCA CCCCCCCCTG AATTTCTCTC CCCAGCACCC ATATTAGGGC ACAGGAAGAG
  GTGGGACCAG TGCAGTCTTG GGGCGGCAAA CTAAGAGCCA GGAACTCGAG GTAGCTGCCA
  GGTCCCAGGG CGCGCCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375408882	MGP_WTSI_8_87503959	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218318662					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375408882	MGP_WTSI_8_87503959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85706689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	1014 bp distal
Cpgi20739	CpG island 20739	within coordinates
Junb	jun B proto-oncogene	1312 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	1838 bp downstream
Rr401033	regulatory region 401033	1101 bp downstream
Rr401034	regulatory region 401034	within coordinates
Tssr78495	transcription start site region 78495	1889 bp downstream
Tssr78496	transcription start site region 78496	1455 bp downstream
Tssr78497	transcription start site region 78497	1431 bp downstream
Tssr78498	transcription start site region 78498	1073 bp downstream
Tssr78499	transcription start site region 78499	127 bp upstream
Tssr78500	transcription start site region 78500	143 bp upstream
Tssr78501	transcription start site region 78501	291 bp upstream
Tssr82220	transcription start site region 82220	1980 bp upstream
Tssr82221	transcription start site region 82221	1944 bp upstream
Tssr82222	transcription start site region 82222	1917 bp upstream
Tssr82223	transcription start site region 82223	1597 bp upstream
Tssr82224	transcription start site region 82224	1520 bp upstream
Tssr82225	transcription start site region 82225	1336 bp upstream
Tssr82226	transcription start site region 82226	937 bp downstream
Tssr82227	transcription start site region 82227	994 bp downstream