rs218318879 SNP Detail

Summary

• ID
  rs218318879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74723110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTTGGC TGAGAGCTGC
  GCTGATTGGG TGCATGTGAG TGTCCCGCGG GTCGCTGGGG GCAGCCCTAG GCCCCCCTGC
  CTTGCCCTGC TTTAGCCGGT GTGGAATGTG GCGTGTCTGC GCGTTTCAAA CCCGCTCTTG
  GCTGGAATGT TGCGTGTGCC TGCGTCCCAA GCCCGTTGGT TACCCGGACT GCTGACGTAG
  Y
  CAGGCCCCGC CCCCGACCAC GTGCACGGGG GACACTCCCG CTGGGGACTG TGCGGCCCGG
  CCCCTCCTCA CCGCCTCGCG GTTGCCTAGG GGCGGGGTCT GGGCGGGGCT GGCGAGGGGC
  CTGGAGTCGG GTTGGCCTCC AGCTCTGGTT GCTGGCCATC TCCCAGGGAG AGCCTTTGCC
  CTGGGTAGGA GGAGCTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749911	CHEV_11_74645786	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218318879					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74723110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Cpgi3247	CpG island 3247	453 bp proximal
Gm74357	predicted gene, 74357	1469 bp upstream
Mnt	max binding protein	within coordinates
Rr402717	regulatory region 402717	1753 bp downstream
Rr450977	regulatory region 450977	1354 bp distal
Rr450978	regulatory region 450978	1287 bp distal
Rr450979	regulatory region 450979	1046 bp distal
Rr450980	regulatory region 450980	1860 bp proximal
Tssr102911	transcription start site region 102911	1381 bp downstream
Tssr102912	transcription start site region 102912	1364 bp downstream
Tssr102913	transcription start site region 102913	1279 bp downstream
Tssr102914	transcription start site region 102914	1006 bp downstream
Tssr109145	transcription start site region 109145	1595 bp upstream
Tssr109146	transcription start site region 109146	480 bp upstream
Tssr109147	transcription start site region 109147	274 bp upstream
Tssr109148	transcription start site region 109148	79 bp upstream
Tssr109149	transcription start site region 109149	49 bp upstream