rs218322550 SNP Detail

Summary

• ID
  rs218322550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24005633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATTTAA AGGTTTTTGT
  CTGTCCCTCC GAGGGAAGGG AAATGTGTTC TTCATTGAAG CTAACATTCC TAACTGCGCA
  GCATCCTTTG TCATTAGCCC AGCCCTCGCC CATTGGTCCA GTATTTATCA TTTGTTCAGC
  CGTCGCCCAT TGTTGTAGTC ACTGACTGCT GAAATAGCCC TGGCACAATT CAGTGACTTT
  R
  TCCCCGCAAC CTTCTACTGT GGAGATGGAA ACCGGAATGG CTCAGGGCGC TGCTTTCTGT
  ATTTTGCGTG CTCGTGCATC CTATCATTCT GGGATTGCTG GCCCTCACCC ATCTGCAGAA
  AGGCTCTCCC CCTTTACTCC CACATGGCCC TGGCTCCGCA GGTCCTTGGG TCCCACCCTT
  CTTCCTGGCT CCTTTTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
ss397842244	MGP_WTSI_17_23923626	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
rs218322550					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842244	MGP_WTSI_17_23923626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24005633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	339 bp distal
Flywch2	FLYWCH family member 2	578 bp upstream
Rr523143	regulatory region 523143	589 bp distal
Rr523144	regulatory region 523144	88 bp distal
Rr523145	regulatory region 523145	266 bp distal
Rr523146	regulatory region 523146	721 bp proximal
Tssr146663	transcription start site region 146663	576 bp upstream
Tssr146664	transcription start site region 146664	537 bp upstream
Tssr146665	transcription start site region 146665	422 bp upstream