rs218324123 SNP Detail

Summary

• ID
  rs218324123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25236206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAATCCT AGAGCCCCCT
  GCTGGACTTT TGAGTTGCGG CGTGAGTCCC CCCCGCCCCC CAATGCATTT AGTATGAAGC
  TGGGGGAAGA CAAAAAAGCC AAAATCCTCT GCTTGGTTAA TCTTTGGGTG GCTTGTAAAG
  ATAACATGAC CTGAATGGAC CACCTTGAAC TACACTGTCC TTCAGTAATG TCTACATGAT
  R
  CAGCTAGTGA TCTTATTCTG GCCCAGAGAG CTAAACTTTA CATCATTGGT CACTATCCCG
  AAAGGCTACT TTAGAACCCA TCCTCTTGTT GAACAAGAGA CTCTAAAAGG AGTATCTTGT
  CTTTAAGCCT ACTTGTTAGT ATGACTCCTT GGGCATAATG AATTTGACCT GCTTTCCTAA
  GAGTTGGCAT GATGGAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397867917	MGP_WTSI_17_25154177	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218324123					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397867917	MGP_WTSI_17_25154177	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25236206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	209 bp distal
Cramp1	cramped chromatin regulator 1	1444 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1171 bp downstream
Tssr143119	transcription start site region 143119	1108 bp downstream
Tssr143120	transcription start site region 143120	809 bp downstream
Tssr143121	transcription start site region 143121	653 bp downstream
Tssr143122	transcription start site region 143122	644 bp downstream
Tssr146805	transcription start site region 146805	1529 bp upstream
Tssr146806	transcription start site region 146806	1514 bp upstream
Tssr146807	transcription start site region 146807	1479 bp upstream
Tssr146808	transcription start site region 146808	1441 bp upstream
Tssr146809	transcription start site region 146809	1411 bp upstream