rs218327093 SNP Detail

Summary

• ID
  rs218327093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90019063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGTTAAG CATTCCAGAT
  TGGCAGTTGT AATCAAAGCT GGTTGATTTA ACCTGTTGCC AACTTTTCAG AATCAGATTT
  TTCTACCCAA AGTTCATATT CCCTTATTCT GTTGCAAAAG TTGGACATTT AAAAAAAAAA
  AAACCTAAAA AATGATTGTC CTTGCTTGTT GGTCGGTTGC TCTTACATTT TCTCCCTATT
  R
  CTACACTTTC TGGAGCAGTA CTAATTTGAA TTTTGGGTGT TCTTTTCTTT TTTGTTAAGT
  GGCAAATTTT CTAGATTTGG ATAGCTAATG AGATTTTTTT TTTAAGGTAG CTCTGGTTAG
  ACCCAAATGG ATCTCCACAG GCAGTAGGAC AAAGGCATTT TCTGACCACT AAATAAAAAT
  AGGGGAACTG ATAAAATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397289556	MGP_WTSI_16_90222420	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218327093					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397289556	MGP_WTSI_16_90222420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90019063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	572 bp distal
Rr519072	regulatory region 519072	1411 bp distal
Rr519073	regulatory region 519073	115 bp distal
Rr519074	regulatory region 519074	1381 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139277	transcription start site region 139277	1638 bp downstream
Tssr139278	transcription start site region 139278	1586 bp downstream
Tssr139279	transcription start site region 139279	1565 bp downstream
Tssr139280	transcription start site region 139280	1543 bp downstream
Tssr139281	transcription start site region 139281	1534 bp downstream
Tssr139282	transcription start site region 139282	1450 bp downstream
Tssr139283	transcription start site region 139283	1404 bp downstream