rs218329350 SNP Detail

Summary

• ID
  rs218329350
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGTCCC TTGGCTTCCT
  GAACAAGAAA TGATTGATGT TGAAAATTGG AAATGCAGCC AGGTGGTGGT GACGGTCTAT
  AGACAGGACT ACCAGGCCTA AATAAACAGG GTCAACTGGA CCCCTAAGAA AGATGAGATA
  AAATGCGTGC CGATTATTTT GCTAGGTGAA GTTCACGTAT TGTCCTGTGT GGCGCGCAGT
  S
  TCTCTCGGGA GGGAGGATCA TTAAAGAAGG TTTTGTTTTC TCTGTAGGTT GCCGTGGACT
  CCGCTGCTGG CGCTCCGCAG AAGCCACCTG GAGGATGACC AGCCAGGATT GTTCAGGGCT
  TTCATTGTCT TGGTCACATT GCTTCATTGT CTTTGTCTGT CCAACCGTCT GTCTAATCAG
  CCTTAGCAAA ATAAGCTATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281260	MGP_WTSI_2_158208192	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218329350					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281260	MGP_WTSI_2_158208192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224376 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1058 bp downstream
Tssr21318	transcription start site region 21318	282 bp downstream
Tssr21319	transcription start site region 21319	113 bp upstream
Tssr21320	transcription start site region 21320	152 bp upstream
Tssr21321	transcription start site region 21321	244 bp upstream
Tssr21322	transcription start site region 21322	389 bp upstream
Tssr21323	transcription start site region 21323	436 bp upstream
Tssr21324	transcription start site region 21324	468 bp upstream
Tssr21325	transcription start site region 21325	508 bp upstream
Tssr21326	transcription start site region 21326	530 bp upstream
Tssr21327	transcription start site region 21327	579 bp upstream
Tssr21328	transcription start site region 21328	617 bp upstream
Tssr21329	transcription start site region 21329	630 bp upstream
Tssr21330	transcription start site region 21330	652 bp upstream
Tssr21331	transcription start site region 21331	1225 bp upstream
Tssr21332	transcription start site region 21332	1362 bp upstream
Tssr21333	transcription start site region 21333	1394 bp upstream
Tssr27228	transcription start site region 27228	745 bp downstream