rs218335409 SNP Detail

Summary

• ID
  rs218335409
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103246115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTCTA AGGTCAGACT
  TCGAGATCTG CAGTGTGTAA GTCCTCTAAC CCTTCCCAGG GCCTCTAGCC TGTCACCTAA
  CCCCTCCCCA GAAACAGCAC AGACATGGAT AATGTGTATG GGTCAGGAGG GTAGGGGGAG
  AGATTTTTCA AGGCAAAGTA AAAGATACAG GGGTCGGGTT TAAGTTAAAG GAACGCAGTC
  S
  TGACTCTTTC ATCCTCTTGC CATGGAGTGT CTGTGTGGGG TGGGGGCAGG TTTTTAAAAC
  TTACACTCAC CTAGGGGACA CACTTCTGGG TGTGTTTTCA GGGAGGTTTA GCTAAAGGCC
  ACCTACCATT TCACCTTCTT GGAATACTCC TTGTCAGTCC CCTCTTATAT TACAGAAACT
  CATCCTTCAA TAATGGCTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404216968	MGP_WTSI_X_101397848	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	C	C	G	C	G	C	C	C	G	C	C	G	G	G	C	G	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218335409					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	C	C	G	C	G	C	C	C	G	C	C	G	G	G	C	G	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404216968	MGP_WTSI_X_101397848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103246115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22895	CpG island 22895	983 bp distal
Nexmif	neurite extension and migration factor	1324 bp upstream
Rr693074	regulatory region 693074	1403 bp distal
Rr693075	regulatory region 693075	834 bp distal
Tssr161734	transcription start site region 161734	1662 bp downstream
Tssr163977	transcription start site region 163977	1392 bp upstream
Tssr163978	transcription start site region 163978	1343 bp upstream
Tssr163979	transcription start site region 163979	1304 bp upstream