rs218338946 SNP Detail

Summary

• ID
  rs218338946
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84587301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGGCT TTGTGGACAC
  GCCTGGCCAG GGCCCTTCGG GGACCTTCCG GTCTTCTCCA ACACCCCACT CAGGGCCTTG
  CCCCAGCAGA CTATACCCCC CTGCCCATTC CCCGGAACAG GGCCCAGGCC ATGGCTCCCC
  ATCCACCTCC AGCCCAGAGA CTCTTGTGGA CCAGATCCTG GAGTCCGCGG ACTCAGACTC
  K
  GAAGGGATAT TCATTGACTT TGGGCGGGGA AGTCGCTCCA GTGTGTCTGA CTTTGAGGCA
  CCGGGAGGCC GGCCAAGTGT TGTGTGATGG CCTGAGACTA GTTCATGTTT TTACTGAGCC
  CTGTGTGTTT GCGTGCCTGT GTATGTGTGT ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325039423	CHEV_15_84533530	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218338946					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84587301 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304870	regulatory region 304870	701 bp distal
Rr304871	regulatory region 304871	500 bp proximal
Rr314877	regulatory region 314877	502 bp distal
Rr404546	regulatory region 404546	759 bp downstream