rs218344544 SNP Detail

Summary

• ID
  rs218344544
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79493831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAAGAA GTCCCTTTTG
  AAGTTCCCCA GCCTTCATCT CCACCCTGCC CCTGCCCAAA AGGCATCTTA AGAGAACTAT
  TAACATCCTC TGAGCCCTCT TCCAGCCCAT CTGATCCTCC AGGCCTTCAT CCACCTGCCA
  CCCTGGCCCC TGGCCTCCAG GAAAGTGTTA GATGAGCATG TGGTAAGGGG ATCAGGTGTG
  K
  GGAGCTGCCG TCTACTCTGG CTAGCCAGGC CAGCATCTGT GTTTGAGGTG TCTAGAACTT
  CTGATGGTCT ACCTTTCAGG CTGGGGGTTA CACAGAGCTC TCTGGTCTCC CCCACCTTTG
  ACAGCAGAGC CCCAGGGCCT GAGTCTGGAC ATCACTGCAG TGAACAACAG CTGTACCTAT
  CAGGCCTGGG CTGACGGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032989	MGP_WTSI_7_86988969	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T	T	T	T	G	T	G	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218344544					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T	T	T	T	G	T	G	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032989	MGP_WTSI_7_86988969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79493831 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	within coordinates
Tssr67372	transcription start site region 67372	1993 bp downstream
Tssr67373	transcription start site region 67373	1574 bp downstream
Tssr67374	transcription start site region 67374	1534 bp downstream
Tssr67375	transcription start site region 67375	1498 bp downstream
Tssr73171	transcription start site region 73171	1982 bp upstream
Tssr73172	transcription start site region 73172	1970 bp upstream
Tssr73173	transcription start site region 73173	1952 bp upstream
Tssr73174	transcription start site region 73174	1866 bp upstream
Tssr73175	transcription start site region 73175	1838 bp upstream
Tssr73176	transcription start site region 73176	1781 bp upstream
Tssr73177	transcription start site region 73177	1755 bp upstream
Tssr73178	transcription start site region 73178	1729 bp upstream
Tssr73179	transcription start site region 73179	1664 bp upstream
Tssr73180	transcription start site region 73180	1574 bp upstream
Tssr73181	transcription start site region 73181	1508 bp upstream
Tssr73182	transcription start site region 73182	1496 bp upstream
Tssr73183	transcription start site region 73183	1457 bp upstream
Tssr73184	transcription start site region 73184	800 bp upstream
Tssr73185	transcription start site region 73185	441 bp downstream