rs218345071 SNP Detail

Summary

• ID
  rs218345071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107010491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT TGGTCCCACC TTGCTGCTGT
  R
  TTTTCCAGGC AACGTCACAC CTCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863866	CHEV_3_106906093	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218345071					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107010491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13670	CpG island 13670	305 bp distal
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	within coordinates
Rr77034	regulatory region 77034	within coordinates
Tssr31158	transcription start site region 31158	1894 bp downstream
Tssr31159	transcription start site region 31159	1613 bp downstream
Tssr31160	transcription start site region 31160	1590 bp downstream
Tssr31161	transcription start site region 31161	1526 bp downstream
Tssr31162	transcription start site region 31162	1506 bp downstream
Tssr31163	transcription start site region 31163	1463 bp downstream
Tssr31164	transcription start site region 31164	1372 bp downstream
Tssr31165	transcription start site region 31165	574 bp downstream