rs218347499 SNP Detail

Summary

• ID
  rs218347499
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCAGCCA GGCATGGTGG
  CATAGACCTT TGACCCCTGC AGTAGAGACG AAGAGACAAG TGAGTTCAAG ATAGTGTGTC
  CACGAGTCCA CACAGTGAGC TGCAGATCAG CCAGGGCTGC ACACAGAGAA CCTGTCTCAC
  AGAACCCAAG CCTTGGGAGA TGAAGTAGCC CAATTGGGCT TGTGTGCAGT TTCATGGGAT
  K
  GGGGCATGAG CAGGATGGGG GGATGGGAGG ACAGGGCAAA AGGCAAGCAG GCATGCACTC
  TTAGCTTAAA GCCCTGGGTT CCCTCCCCAG CACCTGTGGG AATGATGCTG CACTTGTGTA
  ATCCCAGCAC TTTGGAGGTG AAGACAGGAG GGTCAGAAGT TCAAAACCGG GCGTGATGCC
  GCACGCCTTT AATCCCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498905	CHEV_10_117149585	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218347499					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1421 bp distal
Gm56970	predicted gene, 56970	996 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1771 bp upstream
Rr385357	regulatory region 385357	within coordinates
Tssr95923	transcription start site region 95923	1582 bp downstream
Tssr95924	transcription start site region 95924	773 bp downstream
Tssr99467	transcription start site region 99467	1868 bp upstream
Tssr99468	transcription start site region 99468	1793 bp upstream
Tssr99469	transcription start site region 99469	1756 bp upstream