rs218347862 SNP Detail

Summary

• ID
  rs218347862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTGTGA CTGGATGCTG
  GAGTGAACTT TAGCCTGGAG CACATCCTAG GAAGAAAAGA ACCGTTAGTC CACACTTCAG
  CAAAGTCGAC ATTCTTTATT GATTAATTAA TAATCCTTTA CCCAATGATA AGCAAAGGAA
  TGAACAACTA CAAAAACCTT CATTTGCTTA AAAATCTACC ATGTCCTAGG TGAATACAGT
  R
  ATTAATGGCT TTAAATCTAG CAGGTTGAAG TCTGATGCAG AAGAATTACT ATAACTTTGA
  GAACACCCTG AAATAAAAGG TAAATTCTAG GCAATCCTGG GGTACAGATT AAGGCCCTTT
  TTTTTTAAAG ATACACAAAG CAAGAAAGCA TTGTCTAGGG TAACATGAAG AAAATAAGTG
  TTCTTAAGGA GTGTCTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777297	MGP_WTSI_5_88124181	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218347862					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777297	MGP_WTSI_5_88124181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843015 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1178 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1138 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	981 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1293 bp distal
Tssr1529	transcription start site region 1529	595 bp downstream
Tssr46883	transcription start site region 46883	645 bp downstream
Tssr46884	transcription start site region 46884	630 bp downstream
Tssr46885	transcription start site region 46885	609 bp downstream
Tssr46886	transcription start site region 46886	579 bp downstream
Tssr46887	transcription start site region 46887	562 bp downstream
Tssr46888	transcription start site region 46888	456 bp downstream
Tssr46889	transcription start site region 46889	437 bp downstream
Tssr46890	transcription start site region 46890	404 bp downstream
Tssr46891	transcription start site region 46891	391 bp downstream
Tssr46892	transcription start site region 46892	362 bp downstream
Tssr46893	transcription start site region 46893	336 bp downstream
Tssr46894	transcription start site region 46894	291 bp downstream
Tssr46895	transcription start site region 46895	271 bp downstream
Tssr46896	transcription start site region 46896	192 bp downstream
Tssr51618	transcription start site region 51618	616 bp upstream
Tssr51619	transcription start site region 51619	582 bp upstream
Tssr51620	transcription start site region 51620	572 bp upstream
Tssr51621	transcription start site region 51621	553 bp upstream
Tssr51622	transcription start site region 51622	517 bp upstream
Tssr51623	transcription start site region 51623	501 bp upstream
Tssr51624	transcription start site region 51624	484 bp upstream
Tssr51625	transcription start site region 51625	474 bp upstream
Tssr51626	transcription start site region 51626	462 bp upstream
Tssr51627	transcription start site region 51627	436 bp upstream
Tssr51628	transcription start site region 51628	326 bp upstream
Tssr51629	transcription start site region 51629	232 bp upstream
Tssr51630	transcription start site region 51630	184 bp upstream
Tssr51631	transcription start site region 51631	145 bp upstream
Tssr51632	transcription start site region 51632	112 bp downstream
Tssr51633	transcription start site region 51633	897 bp downstream
Tssr51634	transcription start site region 51634	1019 bp downstream
Tssr51635	transcription start site region 51635	1983 bp downstream