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rs218350527 SNP Detail
Summary
  • ID
    rs218350527
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr16:22712515 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACCCAGTGC ATCTACCCAT
GGTAGTTCTG AGGTCTCCGG AGAGTGAAAA TGCCCAGTGA ACTAAATTGG GTTGAGAGTT
TTCAAACTTT GGGGCATTTC AAGGTGTGAA CGGGGAATAC ATAGACAGGT GAAACACTGA
ACTCCTCACA GGGTCCTGCA AGCTTCCCAA AATGCTTCCA TCCTAGTGGT GACAGTTTCC
Y
AGCCTCAGAA TAGAAAGGCG GCAAACAGGA GATAGGACTC TCTGTGCATC CAGGACCCAG
GAAGGTAGAA GATAAAGAGC CAAGGGAGGA GCAAGAGAAA CCTTTAAGGA CACAAACACT
CAAAGAAAGG GAGAAAAGTG GGCAACTAGA GAGAAGAAAG AATGAAGCAG AATGAAAGAT
AGCAAAGATA ATAAACCTTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395628323 MGP_WTSI_16_22893838 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218350527 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395628323 MGP_WTSI_16_22893838 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:22712515 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ahsg alpha-2-HS-glycoprotein within coordinates
Gm30505 predicted gene, 30505 within coordinates
Tssr4818 transcription start site region 4818 941 bp downstream
Tssr4819 transcription start site region 4819 1566 bp upstream
Tssr137557 transcription start site region 137557 1714 bp downstream
Tssr137558 transcription start site region 137558 1184 bp downstream
Tssr137559 transcription start site region 137559 988 bp downstream
Tssr137560 transcription start site region 137560 945 bp downstream
Tssr137561 transcription start site region 137561 920 bp downstream
Tssr137562 transcription start site region 137562 594 bp downstream
Tssr137563 transcription start site region 137563 464 bp upstream
Tssr137564 transcription start site region 137564 483 bp upstream
Tssr137565 transcription start site region 137565 548 bp upstream
Tssr137566 transcription start site region 137566 647 bp upstream
Tssr137567 transcription start site region 137567 1012 bp upstream
Tssr137568 transcription start site region 137568 1031 bp upstream
Tssr137569 transcription start site region 137569 1062 bp upstream
Tssr137570 transcription start site region 137570 1077 bp upstream
Tssr137571 transcription start site region 137571 1411 bp upstream
Tssr137572 transcription start site region 137572 1434 bp upstream
Tssr137573 transcription start site region 137573 1528 bp upstream
Tssr137574 transcription start site region 137574 1549 bp upstream
Tssr137575 transcription start site region 137575 1555 bp upstream
Tssr140501 transcription start site region 140501 1616 bp upstream
Tssr140502 transcription start site region 140502 1470 bp upstream
Tssr140503 transcription start site region 140503 1432 bp upstream
Tssr140504 transcription start site region 140504 585 bp downstream
Tssr140505 transcription start site region 140505 658 bp downstream
Tssr140506 transcription start site region 140506 1065 bp downstream
Tssr140507 transcription start site region 140507 1448 bp downstream
Tssr140508 transcription start site region 140508 1492 bp downstream
Tssr140509 transcription start site region 140509 1511 bp downstream
Tssr140510 transcription start site region 140510 1526 bp downstream
Tssr140511 transcription start site region 140511 1569 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory