rs218353552 SNP Detail

Summary

• ID
  rs218353552
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTAACA TCTTTTTTTC
  TTTGTACTTC TTCACTGGTT TTCAGACGCC CTCTCCTTCA GTCTGTCATT TGCTTCCCTC
  AGAAGAGTCC CTGGTCCCAT AAAATTCTTT ACTTGAGCTT CTTGCCAAGT CAGGACTCTT
  CTTCAGCCAT TGCACCCATG AAACAGAGTT CTGCAGTAGC CCTTCAAAGA AGTCACATGG
  T
  CCAGCCCTGG TCAGTTGGGT GTTGGTCCAT CCAGTGACAT TCTTTTGTGT TACAAGATCC
  TGAAGACTCA CAATCAACCT AATGCCCTAT CCTGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAAATTGGT TGGTTGGTTG GTTGGTTGGT TGGTTGGTTG GTTGGTTGGT
  TGGAGAAAGA AGATACATTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323830618	CHEV_11_99912121	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218353552					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941633 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	70 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	within coordinates
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	within coordinates
Gm11571	predicted gene 11571	1479 bp upstream
Krt31	keratin 31	256 bp upstream
Tssr104894	transcription start site region 104894	1297 bp upstream
Tssr104895	transcription start site region 104895	1453 bp upstream
Tssr104896	transcription start site region 104896	1474 bp upstream
Tssr110726	transcription start site region 110726	250 bp upstream