rs218359500 SNP Detail

Summary

• ID
  rs218359500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68914041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTGCGT GACTCGCCCT
  TTACTGTTGG ATTGTCTTTT GGGGCGCAAT ACTAATTTTT ACTTTATAAA GTGTGTCAGT
  GTTGGGTGAC GCGGGCATAT GTACATGAGT GCAGGTGCCC CTGGAGGGCA TGAACCTCGA
  GCATCCCATT GTGGGTGCTG AAAACCAAAC TTGGGTTCTA CACAAGAAAA AAATTGCTGG
  K
  CCCCCTAGAT TGCCTTTAAA GAGAAGGTAT AATTGAGAGC GTAGAGCAGG CGGAGGGTAG
  AAATTAAGAG CTACTGTGAA ATTCCTGTCA CCATGTTACT GAAGTTTGTG AGTTTCTTAA
  GCTGAGCCAT GTGGAGAGTT GGATTTTCGA TTGTTAGGGT TGCATCTCCT GCATCAGGGA
  ATCCGTTTGT TGCAAGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313324	MGP_WTSI_3_68810630	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218359500					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313324	MGP_WTSI_3_68810630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68914041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	221 bp distal
Rr397713	regulatory region 397713	1919 bp downstream
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29506	transcription start site region 29506	1977 bp downstream
Tssr29507	transcription start site region 29507	1687 bp downstream
Tssr29508	transcription start site region 29508	1566 bp downstream
Tssr29509	transcription start site region 29509	1395 bp downstream
Tssr29510	transcription start site region 29510	1354 bp downstream
Tssr29511	transcription start site region 29511	1223 bp downstream
Tssr29512	transcription start site region 29512	966 bp downstream
Tssr29513	transcription start site region 29513	762 bp downstream
Tssr29514	transcription start site region 29514	636 bp downstream
Tssr33522	transcription start site region 33522	279 bp upstream